Information for 6-AGTCTTGGTA (Motif 9)

C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A
Reverse Opposite:
G C A T T C G A T A G C G T A C G C T A C G T A T A C G G T C A T A G C G A C T
p-value:1e-9
log p-value:-2.077e+01
Information Content per bp:1.574
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif103.3
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets50.5 +/- 25.4bp
Average Position of motif in Background50.5 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:AGTCTTGGTA--
--NNTTGGCANN
 C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.71
Offset:4
Orientation:forward strand
Alignment:AGTCTTGGTA
----TTGGCA
 C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:AGTCTTGGTA--
---NTTGGCANN
 C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AGTCTTGGTA-
---CTTGGCAA
 C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGTCTTGGTA-
--GGTTGGCAT
 C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

SRY/MA0084.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGTCTTGGTA--
---ATTGTTTAN
 C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A A C G T A C G T
A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGTCTTGGTA-
NNACTTGCCTT
 C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGTCTTGGTA-----
NNCGTTGCTATGGNN
 C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A A C G T A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Nr2e3/MA0164.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGTCTTGGTA
AAGCTTG---
 C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGTCTTGGTA---
---CSTGGGAAAD
 C T G A A T C G C A G T A T G C C G A T C G A T C A T G A T C G A G C T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A