Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 812)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47981)	% of Background Sequences with Motif
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-69	-1.597e+02	0.0000	163.0	20.07%	1751.3	3.65%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-46	-1.082e+02	0.0000	145.0	17.86%	2053.8	4.28%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-37	-8.560e+01	0.0000	113.0	13.92%	1560.8	3.25%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-36	-8.401e+01	0.0000	111.0	13.67%	1533.3	3.20%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-35	-8.225e+01	0.0000	100.0	12.32%	1269.1	2.65%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-34	-8.058e+01	0.0000	133.0	16.38%	2247.7	4.69%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-34	-7.870e+01	0.0000	116.0	14.29%	1773.2	3.70%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-33	-7.826e+01	0.0000	121.0	14.90%	1930.8	4.03%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-33	-7.817e+01	0.0000	72.0	8.87%	664.7	1.39%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-32	-7.550e+01	0.0000	96.0	11.82%	1273.3	2.65%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-32	-7.521e+01	0.0000	87.0	10.71%	1046.1	2.18%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-27	-6.369e+01	0.0000	54.0	6.65%	448.3	0.93%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-23	-5.520e+01	0.0000	107.0	13.18%	2031.1	4.23%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-18	-4.305e+01	0.0000	55.0	6.77%	734.8	1.53%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-18	-4.257e+01	0.0000	159.0	19.58%	4464.0	9.31%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-14	-3.428e+01	0.0000	23.0	2.83%	140.6	0.29%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-13	-3.184e+01	0.0000	118.0	14.53%	3278.4	6.84%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-13	-3.038e+01	0.0000	251.0	30.91%	9536.1	19.88%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-12	-2.890e+01	0.0000	40.0	4.93%	583.2	1.22%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-10	-2.401e+01	0.0000	30.0	3.69%	402.6	0.84%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-9	-2.272e+01	0.0000	16.0	1.97%	109.2	0.23%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-9	-2.213e+01	0.0000	55.0	6.77%	1241.6	2.59%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-8	-1.998e+01	0.0000	25.0	3.08%	340.4	0.71%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-8	-1.880e+01	0.0000	16.0	1.97%	144.8	0.30%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-7	-1.678e+01	0.0000	41.0	5.05%	927.9	1.93%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-6	-1.562e+01	0.0000	20.0	2.46%	284.8	0.59%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-5	-1.266e+01	0.0000	11.0	1.35%	107.4	0.22%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-5	-1.242e+01	0.0001	56.0	6.90%	1721.5	3.59%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-5	-1.215e+01	0.0001	27.0	3.33%	590.3	1.23%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-5	-1.184e+01	0.0001	10.0	1.23%	95.4	0.20%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-5	-1.160e+01	0.0001	11.0	1.35%	120.6	0.25%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-1.059e+01	0.0003	17.0	2.09%	303.4	0.63%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-4	-1.028e+01	0.0004	40.0	4.93%	1171.6	2.44%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-4	-9.942e+00	0.0005	57.0	7.02%	1928.6	4.02%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-4	-9.660e+00	0.0007	108.0	13.30%	4387.6	9.15%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-4	-9.381e+00	0.0009	20.0	2.46%	437.7	0.91%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-9.116e+00	0.0011	51.0	6.28%	1719.5	3.59%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-3	-8.994e+00	0.0012	6.0	0.74%	44.9	0.09%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-8.560e+00	0.0018	62.0	7.64%	2268.0	4.73%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-7.580e+00	0.0046	105.0	12.93%	4488.2	9.36%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-3	-7.237e+00	0.0064	42.0	5.17%	1453.6	3.03%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-6.721e+00	0.0104	54.0	6.65%	2056.7	4.29%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-6.708e+00	0.0104	27.0	3.33%	829.7	1.73%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-6.694e+00	0.0104	37.0	4.56%	1268.8	2.65%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-2	-6.541e+00	0.0117	41.0	5.05%	1462.7	3.05%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-6.531e+00	0.0117	46.0	5.67%	1695.7	3.54%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-2	-6.519e+00	0.0117	79.0	9.73%	3306.3	6.89%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-6.435e+00	0.0122	6.0	0.74%	72.8	0.15%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-6.314e+00	0.0135	21.0	2.59%	601.6	1.25%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-2	-5.897e+00	0.0200	39.0	4.80%	1423.5	2.97%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-5.888e+00	0.0200	114.0	14.04%	5204.0	10.85%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-2	-5.790e+00	0.0214	40.0	4.93%	1479.8	3.09%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-5.211e+00	0.0375	45.0	5.54%	1773.7	3.70%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-5.009e+00	0.0450	10.0	1.23%	230.2	0.48%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-2	-4.984e+00	0.0453	15.0	1.85%	425.0	0.89%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-2	-4.971e+00	0.0453	17.0	2.09%	507.1	1.06%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-4.964e+00	0.0453	22.0	2.71%	722.0	1.51%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-2	-4.693e+00	0.0575	20.0	2.46%	652.2	1.36%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-4.513e+00	0.0677	13.0	1.60%	366.0	0.76%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-4.452e+00	0.0707	16.0	1.97%	494.2	1.03%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-4.329e+00	0.0787	18.0	2.22%	588.8	1.23%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-4.292e+00	0.0803	181.0	22.29%	9178.1	19.14%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-4.243e+00	0.0830	24.0	2.96%	865.8	1.81%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-4.160e+00	0.0888	70.0	8.62%	3174.7	6.62%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-4.131e+00	0.0900	43.0	5.30%	1795.6	3.74%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-4.040e+00	0.0971	22.0	2.71%	789.0	1.65%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-3.997e+00	0.0998	35.0	4.31%	1414.4	2.95%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-3.819e+00	0.1175	53.0	6.53%	2344.1	4.89%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.809e+00	0.1175	61.0	7.51%	2760.4	5.76%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-3.782e+00	0.1185	76.0	9.36%	3554.0	7.41%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-3.750e+00	0.1205	18.0	2.22%	628.7	1.31%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.728e+00	0.1215	24.0	2.96%	909.3	1.90%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.624e+00	0.1331	12.0	1.48%	371.6	0.77%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.432e+00	0.1590	5.0	0.62%	103.9	0.22%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.368e+00	0.1673	8.0	0.99%	218.6	0.46%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.366e+00	0.1673	71.0	8.74%	3364.8	7.02%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-3.350e+00	0.1673	26.0	3.20%	1043.0	2.17%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.294e+00	0.1731	240.0	29.56%	12807.4	26.70%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.195e+00	0.1888	20.0	2.46%	767.7	1.60%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-3.194e+00	0.1888	6.0	0.74%	147.6	0.31%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-3.154e+00	0.1917	44.0	5.42%	1977.2	4.12%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.061e+00	0.2079	6.0	0.74%	152.6	0.32%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-3.024e+00	0.2132	41.0	5.05%	1841.0	3.84%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-2.929e+00	0.2317	215.0	26.48%	11503.3	23.98%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.924e+00	0.2317	40.0	4.93%	1804.3	3.76%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.885e+00	0.2365	40.0	4.93%	1811.0	3.78%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.866e+00	0.2381	5.0	0.62%	121.7	0.25%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-2.864e+00	0.2381	31.0	3.82%	1349.3	2.81%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.859e+00	0.2381	17.0	2.09%	654.9	1.37%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.852e+00	0.2381	13.0	1.60%	466.4	0.97%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.786e+00	0.2466	15.0	1.85%	565.9	1.18%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.766e+00	0.2489	45.0	5.54%	2091.9	4.36%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-2.623e+00	0.2841	2.0	0.25%	26.5	0.06%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.613e+00	0.2841	25.0	3.08%	1076.6	2.24%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.601e+00	0.2842	5.0	0.62%	131.5	0.27%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-2.539e+00	0.2994	21.0	2.59%	883.5	1.84%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.537e+00	0.2994	11.0	1.35%	397.7	0.83%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.534e+00	0.2994	37.0	4.56%	1708.5	3.56%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1	-2.534e+00	0.2994	42.0	5.17%	1972.8	4.11%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-2.519e+00	0.2994	7.0	0.86%	219.0	0.46%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-2.461e+00	0.3075	46.0	5.67%	2198.8	4.58%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.422e+00	0.3166	9.0	1.11%	313.4	0.65%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-2.415e+00	0.3166	57.0	7.02%	2800.7	5.84%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.383e+00	0.3228	89.0	10.96%	4566.5	9.52%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-2.380e+00	0.3228	2.0	0.25%	30.7	0.06%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.366e+00	0.3228	55.0	6.77%	2702.7	5.64%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.318e+00	0.3349	34.0	4.19%	1585.3	3.31%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.294e+00	0.3400	50.0	6.16%	2446.3	5.10%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.289e+00	0.3400	92.0	11.33%	4759.8	9.92%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.286e+00	0.3400	41.0	5.05%	1963.9	4.09%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.252e+00	0.3451	42.0	5.17%	2023.0	4.22%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.234e+00	0.3481	8.0	0.99%	280.8	0.59%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.224e+00	0.3486	31.0	3.82%	1442.3	3.01%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.206e+00	0.3515	14.0	1.72%	570.7	1.19%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.179e+00	0.3580	4.0	0.49%	108.3	0.23%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-2.168e+00	0.3589	45.0	5.54%	2201.5	4.59%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.151e+00	0.3620	52.0	6.40%	2585.8	5.39%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.109e+00	0.3742	61.0	7.51%	3088.8	6.44%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.101e+00	0.3743	26.0	3.20%	1198.9	2.50%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.092e+00	0.3744	39.0	4.80%	1892.9	3.95%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.084e+00	0.3744	28.0	3.45%	1306.8	2.72%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-2.076e+00	0.3744	18.0	2.22%	786.1	1.64%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.071e+00	0.3744	29.0	3.57%	1361.6	2.84%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.048e+00	0.3785	154.0	18.97%	8343.9	17.40%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.033e+00	0.3813	45.0	5.54%	2229.4	4.65%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.025e+00	0.3815	78.0	9.61%	4053.7	8.45%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.957e+00	0.4051	1.0	0.12%	9.8	0.02%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.916e+00	0.4184	11.0	1.35%	450.7	0.94%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.914e+00	0.4184	78.0	9.61%	4085.2	8.52%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.889e+00	0.4233	14.0	1.72%	604.9	1.26%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.882e+00	0.4233	93.0	11.45%	4938.5	10.30%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.878e+00	0.4233	80.0	9.85%	4208.3	8.77%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.875e+00	0.4233	17.0	2.09%	760.5	1.59%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.858e+00	0.4239	55.0	6.77%	2819.8	5.88%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.856e+00	0.4239	6.0	0.74%	213.9	0.45%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.835e+00	0.4271	220.0	27.09%	12234.9	25.51%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.793e+00	0.4424	59.0	7.27%	3059.0	6.38%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.791e+00	0.4424	55.0	6.77%	2836.2	5.91%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.787e+00	0.4424	11.0	1.35%	463.6	0.97%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.769e+00	0.4433	20.0	2.46%	932.8	1.94%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.768e+00	0.4433	4.0	0.49%	127.4	0.27%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.740e+00	0.4501	11.0	1.35%	468.0	0.98%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.736e+00	0.4501	20.0	2.46%	937.6	1.95%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.728e+00	0.4501	187.0	23.03%	10376.0	21.63%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.693e+00	0.4616	1.0	0.12%	12.9	0.03%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.649e+00	0.4794	8.0	0.99%	326.8	0.68%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.601e+00	0.4994	21.0	2.59%	1012.6	2.11%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.600e+00	0.4994	27.0	3.33%	1337.9	2.79%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.597e+00	0.4994	33.0	4.06%	1666.6	3.47%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.571e+00	0.5045	4.0	0.49%	138.4	0.29%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.570e+00	0.5045	2.0	0.25%	50.1	0.10%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.563e+00	0.5045	106.0	13.05%	5791.0	12.07%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.560e+00	0.5045	14.0	1.72%	645.7	1.35%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.560e+00	0.5045	14.0	1.72%	645.1	1.35%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.542e+00	0.5045	42.0	5.17%	2177.5	4.54%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.512e+00	0.5144	85.0	10.47%	4612.4	9.62%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.486e+00	0.5247	9.0	1.11%	393.7	0.82%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.476e+00	0.5266	64.0	7.88%	3432.6	7.16%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.458e+00	0.5326	4.0	0.49%	145.1	0.30%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.445e+00	0.5361	11.0	1.35%	502.1	1.05%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.435e+00	0.5384	18.0	2.22%	878.4	1.83%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.419e+00	0.5435	21.0	2.59%	1044.1	2.18%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.415e+00	0.5435	8.0	0.99%	349.3	0.73%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.405e+00	0.5446	9.0	1.11%	402.8	0.84%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.393e+00	0.5477	35.0	4.31%	1824.5	3.80%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.387e+00	0.5479	28.0	3.45%	1436.4	2.99%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.384e+00	0.5479	12.0	1.48%	563.9	1.18%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.360e+00	0.5563	10.0	1.23%	460.6	0.96%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.354e+00	0.5563	29.0	3.57%	1499.6	3.13%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.350e+00	0.5563	5.0	0.62%	202.0	0.42%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.312e+00	0.5733	9.0	1.11%	413.4	0.86%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.305e+00	0.5739	10.0	1.23%	467.6	0.97%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.287e+00	0.5807	19.0	2.34%	959.2	2.00%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.227e+00	0.6133	14.0	1.72%	695.4	1.45%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.214e+00	0.6180	24.0	2.96%	1253.0	2.61%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.214e+00	0.6180	37.0	4.56%	1984.2	4.14%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.209e+00	0.6180	15.0	1.85%	753.8	1.57%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.207e+00	0.6180	21.0	2.59%	1086.8	2.27%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.164e+00	0.6349	9.0	1.11%	432.6	0.90%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.159e+00	0.6349	35.0	4.31%	1886.6	3.93%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.158e+00	0.6349	66.0	8.13%	3659.3	7.63%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.157e+00	0.6349	11.0	1.35%	542.3	1.13%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.137e+00	0.6379	11.0	1.35%	545.7	1.14%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.134e+00	0.6379	4.0	0.49%	170.0	0.35%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.131e+00	0.6379	38.0	4.68%	2065.8	4.31%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.118e+00	0.6399	39.0	4.80%	2126.5	4.43%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.097e+00	0.6501	1.0	0.12%	24.1	0.05%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.088e+00	0.6523	48.0	5.91%	2651.8	5.53%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.067e+00	0.6626	96.0	11.82%	5433.9	11.33%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.057e+00	0.6657	38.0	4.68%	2088.3	4.35%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.044e+00	0.6674	4.0	0.49%	177.7	0.37%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.044e+00	0.6674	4.0	0.49%	177.7	0.37%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.043e+00	0.6674	15.0	1.85%	784.2	1.64%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.038e+00	0.6674	18.0	2.22%	954.7	1.99%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.037e+00	0.6674	168.0	20.69%	9647.6	20.12%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.034e+00	0.6674	42.0	5.17%	2325.5	4.85%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.030e+00	0.6674	8.0	0.99%	397.0	0.83%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.018e+00	0.6674	74.0	9.11%	4180.7	8.72%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.009e+00	0.6674	8.0	0.99%	399.5	0.83%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.848e-01	0.6798	7.0	0.86%	348.0	0.73%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-9.827e-01	0.6798	29.0	3.57%	1595.0	3.33%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-9.820e-01	0.6798	2.0	0.25%	77.2	0.16%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-9.805e-01	0.6798	18.0	2.22%	967.4	2.02%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.713e-01	0.6798	4.0	0.49%	184.9	0.39%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-9.703e-01	0.6798	7.0	0.86%	349.4	0.73%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.610e-01	0.6798	28.0	3.45%	1544.7	3.22%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-9.603e-01	0.6798	15.0	1.85%	801.8	1.67%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-9.374e-01	0.6854	24.0	2.96%	1321.2	2.75%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-9.320e-01	0.6858	4.0	0.49%	188.8	0.39%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-9.280e-01	0.6858	7.0	0.86%	355.7	0.74%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-9.204e-01	0.6872	2.0	0.25%	81.3	0.17%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-9.190e-01	0.6872	12.0	1.48%	639.4	1.33%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-9.125e-01	0.6872	36.0	4.43%	2021.4	4.21%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.106e-01	0.6872	19.0	2.34%	1041.6	2.17%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.095e-01	0.6872	48.0	5.91%	2718.1	5.67%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-8.981e-01	0.6872	96.0	11.82%	5522.6	11.51%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-8.929e-01	0.6872	18.0	2.22%	988.8	2.06%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-8.857e-01	0.6887	113.0	13.92%	6524.8	13.60%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.651e-01	0.6998	37.0	4.56%	2096.4	4.37%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-8.587e-01	0.7011	76.0	9.36%	4374.7	9.12%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-8.508e-01	0.7034	26.0	3.20%	1462.1	3.05%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.428e-01	0.7059	49.0	6.03%	2804.9	5.85%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-8.323e-01	0.7101	4.0	0.49%	199.7	0.42%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-8.027e-01	0.7282	42.0	5.17%	2412.7	5.03%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.908e-01	0.7337	3.0	0.37%	147.4	0.31%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.738e-01	0.7429	26.0	3.20%	1487.3	3.10%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.664e-01	0.7452	19.0	2.34%	1080.1	2.25%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-7.636e-01	0.7452	54.0	6.65%	3133.1	6.53%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-7.628e-01	0.7452	88.0	10.84%	5132.3	10.70%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-7.524e-01	0.7458	17.0	2.09%	967.1	2.02%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-7.382e-01	0.7532	2.0	0.25%	95.2	0.20%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-7.237e-01	0.7609	35.0	4.31%	2035.0	4.24%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-7.204e-01	0.7609	30.0	3.69%	1741.6	3.63%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-7.154e-01	0.7609	29.0	3.57%	1684.5	3.51%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-7.108e-01	0.7609	16.0	1.97%	920.0	1.92%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-7.061e-01	0.7612	45.0	5.54%	2631.0	5.49%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-7.049e-01	0.7612	29.0	3.57%	1688.1	3.52%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-6.891e-01	0.7678	13.0	1.60%	749.3	1.56%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-6.885e-01	0.7678	88.0	10.84%	5179.4	10.80%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.675e-01	0.7780	3.0	0.37%	161.3	0.34%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.671e-01	0.7780	21.0	2.59%	1229.3	2.56%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-6.595e-01	0.7780	3.0	0.37%	162.3	0.34%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-6.534e-01	0.7793	14.0	1.72%	818.7	1.71%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-6.516e-01	0.7793	20.0	2.46%	1175.3	2.45%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-6.297e-01	0.7915	54.0	6.65%	3204.0	6.68%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.254e-01	0.7917	10.0	1.23%	587.7	1.23%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.025e-01	0.8067	13.0	1.60%	773.9	1.61%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.857e-01	0.8171	13.0	1.60%	778.0	1.62%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.834e-01	0.8171	24.0	2.96%	1439.7	3.00%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.800e-01	0.8171	7.0	0.86%	417.7	0.87%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-5.768e-01	0.8171	35.0	4.31%	2100.5	4.38%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-5.752e-01	0.8171	10.0	1.23%	600.5	1.25%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.735e-01	0.8171	48.0	5.91%	2878.3	6.00%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.578e-01	0.8204	20.0	2.46%	1209.4	2.52%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.554e-01	0.8204	5.0	0.62%	300.8	0.63%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.441e-01	0.8252	19.0	2.34%	1154.5	2.41%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.404e-01	0.8252	18.0	2.22%	1095.6	2.28%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.348e-01	0.8265	46.0	5.67%	2781.4	5.80%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.314e-01	0.8265	3.0	0.37%	180.2	0.38%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.303e-01	0.8265	8.0	0.99%	490.6	1.02%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.293e-01	0.8265	4.0	0.49%	243.7	0.51%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.257e-01	0.8265	17.0	2.09%	1040.2	2.17%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-5.149e-01	0.8270	48.0	5.91%	2913.0	6.07%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-5.126e-01	0.8270	3.0	0.37%	183.6	0.38%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.005e-01	0.8327	3.0	0.37%	185.6	0.39%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.869e-01	0.8409	6.0	0.74%	377.6	0.79%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.777e-01	0.8455	34.0	4.19%	2092.7	4.36%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.633e-01	0.8546	2.0	0.25%	126.3	0.26%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-4.588e-01	0.8553	7.0	0.86%	447.6	0.93%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.541e-01	0.8561	74.0	9.11%	4518.8	9.42%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-4.477e-01	0.8584	8.0	0.99%	513.8	1.07%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-4.459e-01	0.8584	19.0	2.34%	1195.8	2.49%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.450e-01	0.8584	10.0	1.23%	639.9	1.33%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.388e-01	0.8584	3.0	0.37%	196.4	0.41%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.369e-01	0.8584	2.0	0.25%	130.8	0.27%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.347e-01	0.8584	4.0	0.49%	262.9	0.55%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-4.342e-01	0.8584	9.0	1.11%	580.4	1.21%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.204e-01	0.8599	7.0	0.86%	458.8	0.96%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.166e-01	0.8602	5.0	0.62%	331.2	0.69%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-4.131e-01	0.8602	13.0	1.60%	838.5	1.75%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.042e-01	0.8647	1.0	0.12%	65.2	0.14%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-3.949e-01	0.8696	25.0	3.08%	1590.7	3.32%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-3.938e-01	0.8696	5.0	0.62%	337.3	0.70%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.839e-01	0.8731	22.0	2.71%	1411.7	2.94%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-3.798e-01	0.8736	13.0	1.60%	852.5	1.78%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.616e-01	0.8865	2.0	0.25%	143.0	0.30%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-3.451e-01	0.8981	25.0	3.08%	1620.9	3.38%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-3.403e-01	0.8994	54.0	6.65%	3407.8	7.11%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.334e-01	0.9024	6.0	0.74%	421.6	0.88%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.318e-01	0.9024	43.0	5.30%	2741.7	5.72%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.294e-01	0.9024	3.0	0.37%	220.8	0.46%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.189e-01	0.9062	15.0	1.85%	1008.4	2.10%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.159e-01	0.9062	91.0	11.21%	5682.3	11.85%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.108e-01	0.9073	5.0	0.62%	362.5	0.76%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.102e-01	0.9073	1.0	0.12%	78.3	0.16%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.865e-01	0.9234	10.0	1.23%	703.2	1.47%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.746e-01	0.9313	48.0	5.91%	3102.8	6.47%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.722e-01	0.9313	6.0	0.74%	444.4	0.93%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.647e-01	0.9343	25.0	3.08%	1677.6	3.50%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.638e-01	0.9343	34.0	4.19%	2243.1	4.68%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.614e-01	0.9343	58.0	7.14%	3733.3	7.78%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.384e-01	0.9496	2.0	0.25%	172.3	0.36%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.098e-01	0.9740	4.0	0.49%	331.4	0.69%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.077e-01	0.9740	88.0	10.84%	5651.1	11.78%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.021e-01	0.9750	29.0	3.57%	1988.2	4.15%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.991e-01	0.9750	1.0	0.12%	101.9	0.21%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.722e-01	0.9981	46.0	5.67%	3102.4	6.47%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.637e-01	1.0000	40.0	4.93%	2735.9	5.70%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.518e-01	1.0000	6.0	0.74%	508.8	1.06%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.328e-01	1.0000	25.0	3.08%	1814.0	3.78%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.238e-01	1.0000	2.0	0.25%	218.8	0.46%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.191e-01	1.0000	16.0	1.97%	1234.8	2.57%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.106e-01	1.0000	105.0	12.93%	6910.2	14.41%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.056e-01	1.0000	8.0	0.99%	693.3	1.45%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.040e-01	1.0000	29.0	3.57%	2123.8	4.43%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.776e-02	1.0000	1.0	0.12%	140.7	0.29%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-9.577e-02	1.0000	48.0	5.91%	3372.6	7.03%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-8.944e-02	1.0000	1.0	0.12%	145.5	0.30%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-8.703e-02	1.0000	34.0	4.19%	2486.4	5.18%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.389e-02	1.0000	3.0	0.37%	332.5	0.69%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.331e-02	1.0000	1.0	0.12%	149.7	0.31%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.185e-02	1.0000	1.0	0.12%	150.4	0.31%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.904e-02	1.0000	53.0	6.53%	3738.4	7.79%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.811e-02	1.0000	6.0	0.74%	578.0	1.21%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.788e-02	1.0000	37.0	4.56%	2705.8	5.64%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-7.233e-02	1.0000	1.0	0.12%	157.0	0.33%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.107e-02	1.0000	1.0	0.12%	158.6	0.33%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-7.094e-02	1.0000	2.0	0.25%	257.1	0.54%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.742e-02	1.0000	1.0	0.12%	161.9	0.34%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.684e-02	1.0000	31.0	3.82%	2339.1	4.88%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.624e-02	1.0000	1.0	0.12%	162.7	0.34%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-4.462e-02	1.0000	13.0	1.60%	1161.9	2.42%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-4.115e-02	1.0000	18.0	2.22%	1530.7	3.19%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.926e-02	1.0000	1.0	0.12%	192.5	0.40%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.245e-02	1.0000	1.0	0.12%	203.7	0.42%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.057e-02	1.0000	74.0	9.11%	5405.4	11.27%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.201e-02	1.0000	108.0	13.30%	7718.4	16.09%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.118e-02	1.0000	1.0	0.12%	265.2	0.55%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-9.590e-03	1.0000	3.0	0.37%	498.5	1.04%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-8.139e-03	1.0000	6.0	0.74%	789.5	1.65%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.813e-03	1.0000	2.0	0.25%	504.2	1.05%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-3.700e-05	1.0000	3.0	0.37%	883.7	1.84%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-8.000e-06	1.0000	14.0	1.72%	2117.7	4.42%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	13.0	1.60%	2680.1	5.59%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	16.0	1.97%	3346.3	6.98%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	41.0	0.09%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	90.3	0.19%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	58.9	0.12%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	22.6	0.05%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	0.000e+00	1.0000	0.0	0.00%	82.6	0.17%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	7.1	0.01%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	40.0	0.08%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	95.5	0.20%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	53.3	0.11%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	255.6	0.53%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	40.2	0.08%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	3.9	0.01%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	12.5	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	2.3	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	14.6	0.03%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	30.4	0.06%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	42.6	0.09%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	11.0	0.02%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	0.000e+00	1.0000	0.0	0.00%	88.7	0.18%