Information for 4-CCAGAAAGAATTTGGA (Motif 13)

A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C C G T A C G T A C G T A A C G T A G C T A G T C A C G T C A G T A C G T A G T C A C G T A C T G A C T G
p-value:1e-9
log p-value:-2.176e+01
Information Content per bp:1.910
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.6 +/- 27.9bp
Average Position of motif in Background51.4 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0177.1_Sox7_2/Jaspar

Match Rank:1
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CCAGAAAGAATTTGGA-
NNCNNNCNCANACAATTAGNAC
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A A C G T
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:2
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCAGAAAGAATTTGGA
TACTGGAAAAAAAA----
 A C G T A C G T A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CCAGAAAGAATTTGGA
AAACAGACAAAGGAAT----
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T

PB0186.1_Tcf3_2/Jaspar

Match Rank:4
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CCAGAAAGAATTTGGA
AGCCGAAAAAAAAAT----
 A C G T A C G T A C G T A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CCAGAAAGAATTTGGA
CAAATCCAGACATCACA----
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.49
Offset:9
Orientation:reverse strand
Alignment:CCAGAAAGAATTTGGA---
---------ATTTGCATAT
 A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAAAGAATTTGGA
ATGCCAGACN---------
 A C G T A C G T A C G T A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.49
Offset:9
Orientation:forward strand
Alignment:CCAGAAAGAATTTGGA---
---------ATTTGCATAA
 A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.49
Offset:4
Orientation:forward strand
Alignment:CCAGAAAGAATTTGGA
----ACAGGATGTGGT
 A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A
A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G C T A G C G T A C G A T A C T G A C G T A C T G A C T G A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.49
Offset:6
Orientation:forward strand
Alignment:CCAGAAAGAATTTGGA---
------TTCATTTGCATAT
 A G T C G T A C C G T A C T A G C G T A G C T A G T C A C T A G T C G A G T C A A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T