Information for 8-GTTAWTTWTWWCA (Motif 9)

A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A
Reverse Opposite:
A C G T A C T G G C A T C G A T C G T A C G T A C G T A C G T A C G T A A C G T C G T A C G T A A G T C
p-value:1e-12
log p-value:-2.912e+01
Information Content per bp:1.865
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.4 +/- 32.2bp
Average Position of motif in Background65.8 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GTTAWTTWTWWCA
GCTATTTTTAGC-
 A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T

PH0020.1_Dlx1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTTAWTTWTWWCA-
ATTAATTANCTCAN
 A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A A C G T
T C G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A G A T C G A T C A C G T A G T C C T G A T A C G

Hoxd3/MA0912.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTTAWTTWTWWCA-
ANGNTAATTANCNCAN
 A C G T A C G T A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0079.1_Hoxd3/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTTAWTTWTWWCA-
ANGNTAATTANCNCAN
 A C G T A C G T A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTAWTTWTWWCA
KCTATTTTTRGH-
 A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A
C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C A C G T

Hoxb5/MA0904.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTTAWTTWTWWCA-
ACGGTAATTAGCTCAT
 A C G T A C G T A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0060.1_Hoxb5/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTTAWTTWTWWCA-
ACGGTAATTAGCTCAT
 A C G T A C G T A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTTAWTTWTWWCA-
GTTAATTANCTCNN
 A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A A C G T
T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A

PH0174.1_Vax1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTTAWTTWTWWCA-
ACGTTAATTAACCCAG
 A C G T A C G T A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A A C G T
T G C A T A G C T C A G C G A T G A C T G T C A G C T A C G A T C A G T C T G A T C G A A G T C G A T C G A T C C G T A C T A G

MEF2C/MA0497.1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTTAWTTWTWWCA-
TTCTATTTTTAGNNN
 A C G T A C T G A C G T A C G T C G T A C G A T A C G T A C G T C G A T A C G T C G T A C G T A A G T C G T C A A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T