Information for 4-GCCCTGACTA (Motif 9)

A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C G T A G T C C G T A A C T G C T A G C T A G A G T C
p-value:1e-5
log p-value:-1.357e+01
Information Content per bp:1.856
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.24%
Number of Background Sequences with motif73.8
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets48.7 +/- 26.6bp
Average Position of motif in Background49.6 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCCTGACTA-----
ACCGTGACTAATTNN
 A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCCCTGACTA
--BCAGACWA
 A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCCCTGACTA
--CATGAC--
 A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A
A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCCTGACTA
-NCGTGACN-
 A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A
A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCCCTGACTA--
TTGCCCGGATTAGG
 A C G T A C G T A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A A C G T A C G T
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTGACTA
TGCCCAGNHW-
 A C G T A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCCCTGACTA--
--GTTAACTAGN
 A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A A C G T A C G T
A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCCCTGACTA
--CCAGACAG
 A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCCCTGACTA--
---TTGACTTTT
 A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCCCTGACTA-
-TGCTGACTCA
 A C T G G A T C A G T C G T A C C G A T A C T G C G T A A G T C A C G T C G T A A C G T
A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A