Information for 3-CCTKSYCTKASWARTT (Motif 5)

A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A C G T C G T A A T C G A C G T G T A C C G T A A C T G C T A G A T C G G T A C C G T A A C T G A C T G
p-value:1e-8
log p-value:-1.982e+01
Information Content per bp:1.828
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif2.54%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.0 +/- 23.2bp
Average Position of motif in Background72.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCTKSYCTKASWARTT--
---ACCGTGACTAATTNN
 A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PH0132.1_Pax6/Jaspar

Match Rank:2
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CCTKSYCTKASWARTT-------
-------TGATTAATTAATTGAC
 A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T A C G T T A C G C G T A G T A C

PH0008.1_Barx2/Jaspar

Match Rank:3
Score:0.51
Offset:7
Orientation:forward strand
Alignment:CCTKSYCTKASWARTT-------
-------TAAGTAATTAGTTATA
 A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C T A T C G A A C T G G A C T G T C A G C T A C A G T C A G T C T G A T C A G A G C T A C G T C T G A G A C T C T G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CCTKSYCTKASWARTT
NNACTTGCCTT-------
 A C G T A C G T A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0039.1_Mnx1/Jaspar

Match Rank:5
Score:0.49
Offset:7
Orientation:forward strand
Alignment:CCTKSYCTKASWARTT-------
-------GTACTAATTAGTGGCG
 A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A A T C G A C G T C T A G T A C G G A T C T A C G

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.49
Offset:9
Orientation:forward strand
Alignment:CCTKSYCTKASWARTT
---------AATAATT
 A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

PH0070.1_Hoxc5/Jaspar

Match Rank:7
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:CCTKSYCTKASWARTT------
-----NNTNATTAATTAATTCG
 A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C T A G A C G T C G T A C T G A A G C T G A C T G T C A C G T A G C A T C A G T C T G A T C G A A G C T C A G T A T G C A T C G

PH0106.1_Msx1/Jaspar

Match Rank:8
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:CCTKSYCTKASWARTT-------
-------NNATTAATTAGTNGNN
 A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G T A T G C A G A C T G A C T C G T A C G T A A C G T A C G T C T G A C T A G G A C T C G A T C A T G A G T C T G C A

PH0133.1_Pax7/Jaspar

Match Rank:9
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:CCTKSYCTKASWARTT------
-----NNNTNCTAATTAGNTCN
 A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G T C A A C T G C G A T T G C A G A T C G A C T T C G A C G T A G C A T A G C T C T G A C T A G A C G T C G A T A T G C C A T G

PH0028.1_En1/Jaspar

Match Rank:10
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:CCTKSYCTKASWARTT---
---GNATTAATTAGTTNNC
 A G T C A G T C A C G T A C T G T A C G A G T C A G T C A C G T A C T G C G T A A T G C C G A T C G T A T C A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C