Information for 13-CCCTCGTATG (Motif 15)

A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G
Reverse Opposite:
A G T C C G T A C G A T C G T A A G T C A T C G C G T A A C T G A C T G A C T G
p-value:1e-8
log p-value:-1.939e+01
Information Content per bp:1.887
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif30.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets46.0 +/- 22.1bp
Average Position of motif in Background55.1 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCCTCGTATG---
GAGCCCTTGTCCCTAA
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G A C G T A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCCTCGTATG-----
CCATTGTATGCAAAT
 A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCCTCGTATG
CCTTTGTT--
 A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCCTCGTATG
TTCCCCCTAC----
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCGTATG
CCCCCTGCTGTG
 A C G T A C G T A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCCTCGTATG----
AAACCTCGTAAAATTT
 A C G T A C G T A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCCTCGTATG-
-VBSYGTCTGG
 A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

HOXC13/MA0907.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCCTCGTATG--
-GCTCGTAAAAA
 A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G A C G T A C G T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCCTCGTATG
CCATTGTTYB
 A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

GCM2/MA0767.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCGTATG
TACCCGCATN--
 A C G T A C G T A G T C A G T C A G T C A C G T A T G C A C T G A C G T G C T A C G A T A C T G
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T A C G T