Information for 13-AGCAGAGCAG (Motif 19)

G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G
Reverse Opposite:
G A T C C G A T A T C G T G A C C G A T T A G C G C A T A C T G G T A C C G A T
p-value:1e-10
log p-value:-2.343e+01
Information Content per bp:1.544
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif7.16%
Number of Background Sequences with motif1339.0
Percentage of Background Sequences with motif2.78%
Average Position of motif in Targets45.7 +/- 26.8bp
Average Position of motif in Background49.9 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGCAGAGCAG----
--CACAGCAGGGGG
 G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCAGAGCAG----
GAGCACAGCAGGACA
 A C G T G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G A C G T A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGCAGAGCAG----
CCACACAGCAGGAGA
 A C G T G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCAGAGCAG------
-DCHCAGCAGGRGGCC
 G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCAGAGCAG----
CCACACAGCAGGAGA
 A C G T G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G A C G T A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Gfi1b/MA0483.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGCAGAGCAG
AAATCACAGCA-
 A C G T A C G T G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGCAGAGCAG-------
NNNANTGCAGTGCNNTT
 G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Gata4/MA0482.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGCAGAGCAG-
NNGAGATAAGA
 G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G A C G T
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCAGAGCAG-
-DCTCAGCAGG
 G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G A C G T
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Gata1/MA0035.3/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGCAGAGCAG--
-ANAGATAAGAA
 G C T A C A T G T G A C C G T A A T C G G C T A A C T G T A G C G C T A C T A G A C G T A C G T
A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A