Information for 4-GGTGGCAGCA (Motif 2)

C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A
Reverse Opposite:
C A G T C T A G G T A C A G C T C T A G A G T C A T G C G T C A A G T C A G T C
p-value:1e-45
log p-value:-1.050e+02
Information Content per bp:1.850
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif9.59%
Number of Background Sequences with motif559.5
Percentage of Background Sequences with motif1.18%
Average Position of motif in Targets51.6 +/- 22.2bp
Average Position of motif in Background51.3 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGCA
GGTTGGCAT--
A C G T C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAGCA-
NGTAGGTTGGCATNNN
A C G T A C G T A C G T A C G T A C G T C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGCA
VBTGWCAGCB
C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

ZBTB7C/MA0695.1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GGTGGCAGCA
NTCGGTGGTCGC-
A C G T A C G T A C G T C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A
A C G T C A G T A G T C C A T G C A T G C A G T T C A G A C T G C A G T G A T C A T C G G A T C A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCAGCA
AGGTGTCA---
A C G T C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

ZBTB7A/MA0750.1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGTGGCAGCA
TCGGTGGTCGCN
A C G T A C G T C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A
A C G T G T A C C A T G A C T G C A G T T A C G C T A G C A G T A G T C A T C G A G T C T G A C

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGTGGCAGCA---
ADGGYAGYAGCATCT
A C G T A C G T C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A A C G T A C G T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

Spz1/MA0111.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGTGGCAGCA
AGGGTAACAGC-
A C G T A C G T C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T

ZBTB7B/MA0694.1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GGTGGCAGCA
TTCGGTGGTCGC-
A C G T A C G T A C G T C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A
C A G T C G A T A G T C C T A G C A T G C A G T A T C G A C T G C A G T G A T C A T C G G A T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGCA
CTTGGCAA--
C T A G C T A G C A G T A T C G T C A G A G T C C T G A A C T G A G T C G T C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T