Information for 3-CTGTCCRTKGTSYTGA (Motif 7)

A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A C T A G A T G C C G T A A G T C G T A C G T C A G A C T A C T G A C T G C G T A A G T C C G T A A C T G
p-value:1e-17
log p-value:-3.934e+01
Information Content per bp:1.890
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.1 +/- 13.9bp
Average Position of motif in Background35.1 +/- 5.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.89
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCCRTKGTSYTGA-
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----CTGTCCRTKGTSYTGA
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTGTCCRTKGTSYTGA
----CCATTGTTTT--
 A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTGTCCRTKGTSYTGA
CTGTTCCTGG------
 A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTGTCCRTKGTSYTGA
CTGACCTTTG------
 A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTGTCCRTKGTSYTGA
----CCTTTGTT----
 A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTGTCCRTKGTSYTGA
----CCATTGTTYB--
 A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTGTCCRTKGTSYTGA
---NCCATTGTTC---
 A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A
A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTGTCCRTKGTSYTGA
---NCCATTGTTY---
 A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A
A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCRTKGTSYTGA
GCTGTCAA---------
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T C A T G A C T G A C G T A T C G A G T C A C G T A C T G C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T