Information for 3-GAGAKCTKTCYCS (Motif 4)

A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C
Reverse Opposite:
A T C G A C T G C T G A A C T G C G T A G T A C C G T A A C T G G T A C A C G T A G T C A C G T A G T C
p-value:1e-15
log p-value:-3.683e+01
Information Content per bp:1.873
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.6 +/- 16.0bp
Average Position of motif in Background60.6 +/- 2.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TGIF1/MA0796.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAGAKCTKTCYCS
TGACAGCTGTCA--
 A C G T A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C
G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGAKCTKTCYCS
TGACAGCTGTCA--
 A C G T A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C
G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGAKCTKTCYCS
TGACACCTGTCA--
 A C G T A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C
G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAGAKCTKTCYCS
TGACACCTGTCA--
 A C G T A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C
G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GAGAKCTKTCYCS
NNNCTGATATCTCNNNN-
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGAKCTKTCYCS--
AAAGACCTGTCAATCC
 A C G T A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGAKCTKTCYCS
BAACAGCTGT----
 A C G T A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C
A C G T T C G A T C G A A G T C G T C A T A C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T

MSC/MA0665.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGAKCTKTCYCS
AACAGCTGTT---
 A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C
C T G A T G C A A T G C C G T A A T C G A T G C A C G T A C T G A G C T A G C T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAGAKCTKTCYCS
TGCAGCTGTCCCT
 A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

MYF6/MA0667.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAGAKCTKTCYCS
AACAGCTGTT---
 A C T G C G T A C T A G C G T A A C T G A G T C C G A T A C T G A C G T G T A C A G C T A G T C A T G C
T C G A T C G A A G T C T C G A T C A G A G T C C G A T A T C G G A C T A G C T A C G T A C G T A C G T