Information for 7-KAGGTCTGGC (Motif 16)

A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C
Reverse Opposite:
A C T G A G T C G T A C C G T A A C T G C G T A G T A C A G T C A C G T T G A C
p-value:1e-9
log p-value:-2.156e+01
Information Content per bp:1.848
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif169.9
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets54.1 +/- 24.0bp
Average Position of motif in Background55.0 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:KAGGTCTGGC--
--GGTCTGGCAT
 A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C A C G T A C G T
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---KAGGTCTGGC----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:KAGGTCTGGC----
--TGTCTGDCACCT
 A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:KAGGTCTGGC
-CTGTCTGG-
 A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-KAGGTCTGGC
VBSYGTCTGG-
 A C G T A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---KAGGTCTGGC---
GCGGAGGTGTCGCCTC
 A C G T A C G T A C G T A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:KAGGTCTGGC
-AGGCCTNG-
 A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:KAGGTCTGGC----
-CTGTCTGTCACCT
 A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:KAGGTCTGGC
-TWGTCTGV-
 A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KAGGTCTGGC
-AGGCCTAG-
 A C T G C G T A C T A G A C T G A C G T A G T C G C A T A C T G C T A G A G T C
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T