Information for 1-CAGTCACATT (Motif 8)

A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T
Reverse Opposite:
G T C A T G C A A C G T A C T G A C G T A T C G G T C A A T G C A C G T A T C G
p-value:1e-10
log p-value:-2.420e+01
Information Content per bp:1.859
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.53%
Number of Background Sequences with motif174.9
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets49.1 +/- 24.3bp
Average Position of motif in Background50.7 +/- 35.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

USF2/MA0526.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CAGTCACATT--
-GGTCACATGAC
 A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAGTCACATT
CCAGGAACAG-
 A C G T A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CAGTCACATT--
--GTCACATGAY
 A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

USF1/MA0093.2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGTCACATT--
-GGTCACGTGGC
 A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C

TEAD4/MA0809.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CAGTCACATT----
----CACATTCCAT
 A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T

TEAD1/MA0090.2/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CAGTCACATT----
----CACATTCCAT
 A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T

Sox1/MA0870.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGTCACATT---
AACAATAACATTGTT
 A C G T A C G T A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGTCACATT
-AGTCACGC-
 A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CAGTCACATT--
--GTCACGTGGM
 A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C A G C A G T A G T C C G T A A T G C T C A G G C A T A C T G A C T G T G A C

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAGTCACATT-----
CGAAGCACACAAAATA
 A C G T A T G C G T C A A T C G A C G T A T G C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A