Information for 11-CYGCCATSRAGTK (Motif 20)

A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T
Reverse Opposite:
T G C A T G C A A T G C A G C T G A T C T A G C G T C A A C G T C A T G A C T G A G T C C T G A A C T G
p-value:1e-6
log p-value:-1.506e+01
Information Content per bp:1.714
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif126.7
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets48.7 +/- 23.9bp
Average Position of motif in Background50.9 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CYGCCATSRAGTK
GTCCGCCATTA----
 A C G T A C G T A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CYGCCATSRAGTK
GCCGCCATCTTG--
 A C G T A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CYGCCATSRAGTK
GCNGCCATCTTG--
 A C G T A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CYGCCATSRAGTK
-GGCCATTAAC--
 A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CYGCCATSRAGTK
CTGCCCGCA----
 A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CYGCCATSRAGTK----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PH0056.1_Hoxa9/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CYGCCATSRAGTK---
ACGGCCATAAAATTAAT
 A C G T A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CYGCCATSRAGTK-
NTGCCCANNGGTNA
 A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T A C G T
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CYGCCATSRAGTK
TACGCCCCGCCACTCTG--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CYGCCATSRAGTK
-TGCCAA------
 A G T C G A C T A C T G A G T C G A T C G T C A C A G T A T C G C T A G C T G A A T C G A C G T A C G T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T