Information for 12-CTGTGGCCAG (Motif 13)

A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G
Reverse Opposite:
T G A C A C G T C T A G A T C G A T G C A T G C G T C A G T A C G T C A C T A G
p-value:1e-9
log p-value:-2.241e+01
Information Content per bp:1.828
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.67%
Number of Background Sequences with motif349.3
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets47.3 +/- 27.3bp
Average Position of motif in Background49.0 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTGTGGCCAG
GTCTGTGGTTT-
 A C G T A C G T A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTGTGGCCAG
NNHTGTGGTTWN
 A C G T A C G T A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGTGGCCAG
GCTGTG-----
 A C G T A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTGTGGCCAG
CTGTGGTTTN
 A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTGTGGCCAG
GCTGTGGTTT-
 A C G T A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CTGTGGCCAG
TCACCTCTGGGCAG
 A C G T A C G T A C G T A C G T A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGTGGCCAG--
CTGTTGCTAGGS
 A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGTGGCCAG
-TNNGGGCAG
 A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGTGGCCAG---
---TGCCCAGNHW
 A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTGTGGCCAG
SCCTSAGGSCAW
 A C G T A C G T A G T C C A G T A C T G A C G T A T C G A T C G A T G C G A T C T G C A A C T G
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T