Information for 4-CCGGCTGATV (Motif 9)

A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C
Reverse Opposite:
A C T G T C G A A C G T A G T C C T G A A C T G G T A C A T G C T A C G C T A G
p-value:1e-10
log p-value:-2.454e+01
Information Content per bp:1.718
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.67%
Number of Background Sequences with motif440.1
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets46.4 +/- 23.7bp
Average Position of motif in Background49.6 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCGGCTGATV
CCTGCTGAGH
 A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

NRL/MA0842.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCGGCTGATV
AATTTGCTGAC-
 A C G T A C G T A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCGGCTGATV--
--TGCTGACTCA
 A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C A C G T A C G T
A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

POL002.1_INR/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCGGCTGATV
NNNANTGA--
 A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCGGCTGATV
ATGGGGTGAT-
 A C G T A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C
T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T

PH0016.1_Cux1_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCGGCTGATV------
ACCGGTTGATCACCTGA
 A C G T A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

SREBF1/MA0595.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCGGCTGATV
GTGGGGTGAT-
 A C G T A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C
T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCGGCTGATV
--NGCTN---
 A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCGGCTGATV
HCAGCTGDTN
 A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

Mafb/MA0117.2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCGGCTGATV
AAAATGCTGACT
 A C G T A C G T A G T C A T G C A T C G A C T G G T A C A G C T A C T G C G T A A G C T T G A C
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T