Information for 2-GCCTGGCTCCATC (Motif 6)

A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C
Reverse Opposite:
A C T G C T G A A C G T A C T G A C T G G T C A A C T G A T G C A G T C C G T A A C T G A C T G G T A C
p-value:1e-11
log p-value:-2.620e+01
Information Content per bp:1.903
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.0 +/- 31.0bp
Average Position of motif in Background34.6 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GCCTGGCTCCATC---
----GGCTCYAKCAYC
 A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGGCTCCATC--
NNNNTTGGCGCCGANNN
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGGCTCCATC--
NNNNTTGGCGCCGANNN
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCCTGGCTCCATC
CTGTCTGTCACCT--
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGGCTCCATC
TGTCTGDCACCT--
 A C G T A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCCTGGCTCCATC
-NTTGGCANN---
 A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCCTGGCTCCATC---
----GCCGCCATCTTG
 A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGGCTCCATC-
TGCCTGCGYCMCCTT
 A C G T A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C A C G T
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCCTGGCTCCATC
GGTCTGGCAT----
 A C G T A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GCCTGGCTCCATC
-----GCTCCG--
 A C T G A G T C A G T C A C G T A C T G A T C G A G T C A C G T A G T C G T A C C G T A A G C T A G T C
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T