Information for 3-GCCYCTGCRGCTGCCA (Motif 5)

A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
Reverse Opposite:
G C A T A C T G T C A G G T A C T G C A A T C G T G A C A G T C C T A G A T G C G T C A A C T G T C A G A C T G A C T G A G T C
p-value:1e-12
log p-value:-2.787e+01
Information Content per bp:1.705
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif145.0
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets55.3 +/- 24.1bp
Average Position of motif in Background50.7 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCCYCTGCRGCTGCCA
SNGCACCTGCHS------
 A C G T A C G T A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GCCYCTGCRGCTGCCA
NNTNCGCACCTGTNGAN----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T A C G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCYCTGCRGCTGCCA
CGCACCTGCT-------
 A C G T A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCCYCTGCRGCTGCCA
AACACCTGCT-------
 A C G T A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCYCTGCRGCTGCCA
CGCAGCTGCG-------
 A C G T A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCYCTGCRGCTGCCA
TACACCTGTC-------
 A C G T A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
C A G T T C G A A G T C C T G A A T G C T A G C C G A T T C A G A G C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCYCTGCRGCTGCCA
NNCACCTGNN-------
 A C G T A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCCYCTGCRGCTGCCA
CTCAGCAGCTGCTACTG---
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCCYCTGCRGCTGCCA
TGCAGCTGTCCCT----
 A C G T A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T A C G T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCYCTGCRGCTGCCA
NVCAGCTGBBNN-----
 A C G T A C T G A G T C G T A C A G T C A G T C C A G T A T C G A G T C C T A G A C T G A T G C A C G T C A T G A G T C A G T C C G T A
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C A C G T A C G T A C G T A C G T A C G T