Information for 9-CTGCCTGBAGAGC (Motif 18)

A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C
Reverse Opposite:
T A C G A G T C C G A T A G T C A G C T T C G A A G T C C G T A A T C G A C T G A G T C C T G A T A C G
p-value:1e-8
log p-value:-2.048e+01
Information Content per bp:1.795
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif77.6
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets47.2 +/- 25.8bp
Average Position of motif in Background43.1 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGCCTGBAGAGC-
-TGCCCTNAGGGCA
 A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTGCCTGBAGAGC
CCCCCTGCTGTG-
 A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGCCTGBAGAGC
CTGCCCGCA----
 A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTGCCTGBAGAGC
GGCCYCCTGCTGDGH
 A C G T A C G T A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGCCTGBAGAGC-
-TGCCCTNAGGGCA
 A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGCCTGBAGAGC-
-TGCCCTGAGGGCA
 A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

Bcl6/MA0463.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGCCTGBAGAGC-
TTTCCTAGAAAGCA
 A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C A C G T
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTGCCTGBAGAGC
---CCTGCTGAGH
 A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

TFAP2A/MA0003.3/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGCCTGBAGAGC
-NGCCTGAGGCN-
 A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C
A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGCCTGBAGAGC
-TGCCTGAGGCN-
 A G T C A G C T A C T G A G T C A T G C G C A T A C T G A G C T C T G A A C T G C G T A C T A G A T G C
A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T