Information for 4-GCMSYCAYCGCCAGRC (Motif 11)

A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C
Reverse Opposite:
A C T G A G C T A G T C A C G T A C T G A C T G A G T C A C T G C T A G A C G T A C T G C T G A A T C G A C T G A C T G A G T C
p-value:1e-10
log p-value:-2.431e+01
Information Content per bp:1.864
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets71.8 +/- 10.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GCMSYCAYCGCCAGRC------
-----CAAATCCAGACATCACA
 A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.57
Offset:10
Orientation:reverse strand
Alignment:GCMSYCAYCGCCAGRC--
----------CCAGACAG
 A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:10
Orientation:reverse strand
Alignment:GCMSYCAYCGCCAGRC----
----------CCAGACRSVB
 A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCMSYCAYCGCCAGRC--
-TACGCCCCGCCACTCTG
 A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C A C G T A C G T
A C G T C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GCMSYCAYCGCCAGRC-
-------ATGCCAGACN
 A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCMSYCAYCGCCAGRC----
GCCTCCTCCMTCWGACTGKS
 A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C A C G T A C G T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.52
Offset:10
Orientation:reverse strand
Alignment:GCMSYCAYCGCCAGRC--
----------BCAGACWA
 A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:GCMSYCAYCGCCAGRC
--------TGCCAA--
 A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GCMSYCAYCGCCAGRC
------CGTGCCAAG-
 A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

ZBTB33/MA0527.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GCMSYCAYCGCCAGRC
-NAGNTCTCGCGAGAN
 A C T G A G T C G T A C T A G C A G C T A G T C C G T A A G T C A G T C A C T G A G T C A G T C C G T A T A C G T C G A A G T C
A C G T T A G C T C G A T C A G T C G A A G C T T G A C A G C T A G T C C T A G G A T C A C T G C T G A A C T G T C G A T C A G