Information for 10-CTCGKCTGCA (Motif 17)

A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A
Reverse Opposite:
C G A T A C T G A T G C C T G A A C T G G T C A G T A C T C A G T G C A A T C G
p-value:1e-8
log p-value:-1.907e+01
Information Content per bp:1.755
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.06%
Number of Background Sequences with motif921.5
Percentage of Background Sequences with motif1.91%
Average Position of motif in Targets48.7 +/- 27.8bp
Average Position of motif in Background50.9 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0044.1_Mtf1_1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTCGKCTGCA----
GGGCCGTGTGCAAAAA
 A C G T A C G T A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A A C G T A C G T A C G T A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCGKCTGCA
VBSYGTCTGG-
 A C G T A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTCGKCTGCA
CGCAGCTGCG
 A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

NRL/MA0842.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTCGKCTGCA----
---GTCAGCANNTN
 A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

PB0041.1_Mafb_1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTCGKCTGCA-----
NCTANGTCAGCAAATTT
 A C G T A C G T A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A A C G T A C G T A C G T A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

Mafb/MA0117.2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTCGKCTGCA----
--NGTCAGCANTTT
 A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTCGKCTGCA-----
AATCGCACTGCATTCCG
 A C G T A C G T A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A A C G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTCGKCTGCA
--CAGCTGNT
 A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A
A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTCGKCTGCA
-CTGTCTGG-
 A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

HINFP/MA0131.2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTCGKCTGCA-
CAACGTCCGCGG
 A C G T A T G C A C G T A G T C C A T G A C G T G T A C A G C T A T C G A G T C G C T A A C G T
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G