Information for 5-GCCCTGACAA (Motif 12)

A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T T A G C C G T A A C T G A C T G C T A G A G T C
p-value:1e-9
log p-value:-2.270e+01
Information Content per bp:1.928
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.5 +/- 34.5bp
Average Position of motif in Background49.9 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCCCTGACAA
---TTGACAG
 A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A
A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCCCTGACAA-
-VGCTGWCAVB
 A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

INSM1/MA0155.1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTGACAA
CGCCCCCTGACA-
 A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCCCTGACAA
--GCTGTCAA
 A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCCCTGACAA
--RHTGWCAR
 A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A
A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCCTGACAA
CTGCCCGCA---
 A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCCTGACAA---
AAAGACCTGTCAATCC
 A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCCTGACAA-
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

PH0104.1_Meis2/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCCTGACAA---
AAAGACCTGTCAATAC
 A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCCCTGACAA
-ARNTGACA-
 A C T G A G T C A G T C A G T C A C G T A C T G C G T A A G T C C G T A C G T A
A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T