Information for 6-TGGCTGCACA (Motif 7)

C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A
Reverse Opposite:
G A C T A C T G C A G T A T C G A G T C G T C A A C T G T A G C A T G C C G T A
p-value:1e-11
log p-value:-2.672e+01
Information Content per bp:1.832
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.42%
Number of Background Sequences with motif160.3
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets54.0 +/- 23.0bp
Average Position of motif in Background50.7 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGCACA
TWGTCTGV---
 A C G T C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGGCTGCACA----
NTNTATGTGCACATNNN
 A C G T A C G T A C G T C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A A C G T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGCACA
TTGGCA-----
 A C G T C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGGCTGCACA----
NNGTATGTGCACATNNN
 A C G T A C G T A C G T C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A A C G T A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGGCTGCACA
-NGCTN----
 C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TGGCTGCACA
CAAGATGGCGGC---
 A C G T A C G T A C G T A C G T A C G T C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTGCACA
NTTGGCANN---
 A C G T A C G T C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGCTGCACA------
NNTTTGCACACGGCCC
 C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGGCTGCACA-------
-AGCGGCACACACGCAA
 C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.58
Offset:-8
Orientation:forward strand
Alignment:--------TGGCTGCACA
GTCATGCHTGRCTGS---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G A T C G A G T C C A G T A C T G A T G C G T C A G T A C C T G A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T