Information for 4-TTTGCGCTCCAGTCTG (Motif 12)

A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G
Reverse Opposite:
A G T C G T C A A T C G C G T A A G T C A G C T A C T G A C T G C G T A C T A G T A G C A C T G A G T C C G T A C G T A C T G A
p-value:1e-10
log p-value:-2.453e+01
Information Content per bp:1.912
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.4 +/- 17.8bp
Average Position of motif in Background46.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TTTGCGCTCCAGTCTG
-----GCTCCG-----
 A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.51
Offset:9
Orientation:forward strand
Alignment:TTTGCGCTCCAGTCTG-
---------CTGTCTGG
 A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TTTGCGCTCCAGTCTG
TTTTCGCGCGAA----
 A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G
G A C T A G C T A G C T A G C T A T G C A T C G A G T C A C T G A T G C A T C G T C G A T C G A A C G T A C G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:4
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TTTGCGCTCCAGTCTG----
TTTMCGCTTSABTGAACACN
 A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.49
Offset:7
Orientation:forward strand
Alignment:TTTGCGCTCCAGTCTG-
-------VBSYGTCTGG
 A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:TTTGCGCTCCAGTCTG-
-TNNTGCTACTGTNNNN
 A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G A C G T
A C G T G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:TTTGCGCTCCAGTCTG
--NSCACTYVAV----
 A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:TTTGCGCTCCAGTCTG------
-----NNTNNTGTCTGGNNTNG
 A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Pax6/MA0069.1/Jaspar

Match Rank:9
Score:0.48
Offset:0
Orientation:forward strand
Alignment:TTTGCGCTCCAGTCTG
TTCACGCATGAGTT--
 A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:10
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--TTTGCGCTCCAGTCTG
NNTTTGCACACGGCCC--
 A C G T A C G T A G C T A C G T A C G T A C T G A G T C A C T G A G T C A C G T A G T C A G T C C T G A A C T G A C G T A T G C A C G T A C T G
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C A C G T A C G T