Information for 4-GCTTCCTTTCTGGGGC (Motif 4)

A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C
Reverse Opposite:
A C T G A G T C A G T C A G T C A G T C C G T A C T A G C T G A G T C A C G T A A C T G A T C G G C T A G T C A T A C G A T G C
p-value:1e-17
log p-value:-4.115e+01
Information Content per bp:1.777
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.7 +/- 25.0bp
Average Position of motif in Background33.1 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCTTCCTTTCTGGGGC--
-NNTNNTGTCTGGNNTNG
 A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C A C G T A C G T
A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GCTTCCTTTCTGGGGC
-----CTGTCTGG---
 A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GCTTCCTTTCTGGGGC--
------TGTCAGGGGGCG
 A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCTTCCTTTCTGGGGC
---VBSYGTCTGG---
 A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

PB0033.1_Irf3_1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCTTCCTTTCTGGGGC
CAGTTTCGNTTCTN----
 A C G T A C G T A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C
A G T C C T G A A T C G C A G T C G A T A C G T A G T C A T C G C A T G C G A T G C A T G A T C G A C T T A G C A C G T A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCTTCCTTTCTGGGGC
ACTTTCGTTTCT-----
 A C G T A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T A C G T A C G T A C G T A C G T A C G T

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:7
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GCTTCCTTTCTGGGGC-
-------TTCTNMGGAA
 A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T G C A T A T G C G A C T C T A G T G C A C T A G C T A G G C T A C T G A

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCTTCCTTTCTGGGGC
NNGCACCTTTCTCC---
 A C G T A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GCTTCCTTTCTGGGGC
-----TTTTATKRGG-
 A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C
A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCTTCCTTTCTGGGGC
ACTTCCTGTT------
 A T C G A T G C A C G T C A G T A T G C G T A C A C G T A C G T A G C T A G T C A C G T A C T G C T A G C T A G A C T G T G A C
T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T