Information for 12-GCACCCAGGAGCG (Motif 14)

A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G
Reverse Opposite:
A G T C A C T G A T G C A C G T A T G C A G T C A C G T A T C G A C T G A T C G A C G T A C T G A G T C
p-value:1e-10
log p-value:-2.399e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.6 +/- 25.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCACCCAGGAGCG----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCACCCAGGAGCG----
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C G T A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCACCCAGGAGCG--
SCAGYCADGCATGAC
 A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GCACCCAGGAGCG
------CGGAGC-
 A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCACCCAGGAGCG
GGACCACCCACG----
 A C G T A C G T A C G T A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GCACCCAGGAGCG
---NNCAGGTGCG
 A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G
A C G T A C G T A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GCACCCAGGAGCG----
ATCCACAGGTGCGAAAA
 A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G A C G T A C G T A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

T/MA0009.2/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCACCCAGGAGCG-
TCACACCTAGGTGTGA
 A C G T A C G T A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G A C G T
G A C T T G A C C T G A A G T C C T G A G A T C T G A C G C A T C T G A A C T G C T A G A G C T C T A G G A C T A C T G C T G A

ZEB1/MA0103.2/Jaspar

Match Rank:9
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GCACCCAGGAGCG-
-----CAGGTGAGG
 A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:GCACCCAGGAGCG--
---CACAGCAGGGGG
 A C T G A G T C C G T A A T G C A G T C A T G C C G T A A C T G A T C G C G T A A T C G A G T C A C T G A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G