Information for 2-GTGGCTGCCAGCCTTA (Motif 3)

A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A
Reverse Opposite:
A G C T C T G A C G T A A C T G A T C G A T G C A C G T C T A G A C T G A G T C C G T A A C T G A G T C A T G C C T G A A T G C
p-value:1e-15
log p-value:-3.597e+01
Information Content per bp:1.794
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.9 +/- 29.5bp
Average Position of motif in Background67.6 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GTGGCTGCCAGCCTTA
CTGGCAGNCTGCCA--
 A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTGGCTGCCAGCCTTA
-TGGCACCATGCCAA-
 A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTGGCTGCCAGCCTTA
TTGGCANNNTGCCAAG
 A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTGGCTGCCAGCCTTA
CTGTCTGTCACCT---
 A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTGGCTGCCAGCCTTA
-TGAGTGACAGSC---
 A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGGCTGCCAGCCTTA
-TGTCTGDCACCT---
 A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GTGGCTGCCAGCCTTA
----ATGCCAACC---
 A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GTGGCTGCCAGCCTTA
TWGTCTGV--------
 A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GTGGCTGCCAGCCTTA
----CTGCCCGCA---
 A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A
A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GTGGCTGCCAGCCTTA-
-ACTATGCCAACCTACC
 A T C G A G C T A T C G A C T G G T A C C G A T C T A G A G T C A G T C T C G A A T C G A T G C G T A C C G A T A G C T T C G A A C G T
A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C