Information for 10-TTTGCCACTC (Motif 23)

A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C
Reverse Opposite:
A T C G C G T A A C T G A C G T C T A G C T A G A T G C G T C A C T G A C G T A
p-value:1e-6
log p-value:-1.391e+01
Information Content per bp:1.814
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif49.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets52.7 +/- 28.3bp
Average Position of motif in Background48.6 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)3.5
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TTTGCCACTC--
SCTGTCAVTCAV
 A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TTTGCCACTC--
NCTGTCAATCAN
 A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTTGCCACTC-
GSCTGTCACTCA
 A C G T A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTTGCCACTC
TATGCAAAT-
 A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTTGCCACTC
CTTGGCAA--
 A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTGCCACTC
TGTCTGDCACCT
 A C G T A C G T A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0114.1_Egr1_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTTGCCACTC----
NNAGTCCCACTCNNNN
 A C G T A C G T A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C A C G T A C G T A C G T A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTTGCCACTC--
--MRSCACTYAA
 A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C A C G T A C G T
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

POU3F2/MA0787.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTTGCCACTC-
TTATGCAAATTA
 A C G T A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTTGCCACTC
GGTGCCAAGT
 A C G T A G C T A C G T A T C G G A T C A G T C C G T A G T A C A C G T A T G C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T