Information for 20-CCTCTCGACG (Motif 43)

A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G
Reverse Opposite:
G A T C C A T G A C G T G A T C T A C G C T G A C T A G T C G A C A T G T A C G
p-value:1e-1
log p-value:-4.186e+00
Information Content per bp:1.648
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 0.0bp
Average Position of motif in Background73.7 +/- 9.2bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTCGACG
NSCACTYVAV-
 A C G T A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCTCTCGACG
AASCACTCAA--
 A C G T A C G T A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCTCTCGACG
RSCACTYRAG-
 A C G T A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCTCTCGACG
AGCCACTCAAG-
 A C G T A C G T A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCTCTCGACG--
TAAGCCACTTGAAATT
 A C G T A C G T A C G T A C G T A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTCTCGACG
CCACTTGAA-
 A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTCTCGACG
CGTCTAGACA
 A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCTCTCGACG---
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTCGACG--
NNAATTCTCGNTNAN
 A C G T A C G T A C G T A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G A C G T A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCTCTCGACG
AACATCTGGA--
 A C G T A C G T A T G C G T A C A G C T G A T C G A C T A T G C C T A G T G C A G T A C C T A G
T G C A C T G A A T G C G T C A A C G T A T G C A C G T A C T G A C T G T G C A A C G T A C G T