Information for 9-TGCTAACTAT (Motif 12)

A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T
Reverse Opposite:
C G T A A C G T C T G A A T C G A C G T A C G T C G T A C T A G A G T C C G T A
p-value:1e-10
log p-value:-2.314e+01
Information Content per bp:1.872
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif21.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets47.6 +/- 29.4bp
Average Position of motif in Background58.5 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0109.1_Bbx_2/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TGCTAACTAT--
NNNNCTGTTAACNNTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T A C G T A C G T
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TGCTAACTAT----
AGCTGTTAACTAGCCGT
 A C G T A C G T A C G T A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T A C G T A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGCTAACTAT-
-GTTAACTAGN
 A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T A C G T
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGCTAACTAT
GGTGCCAAGT--
 A C G T A C G T A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGCTAACTAT
TATGCWAATBAV
 A C G T A C G T A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

NRL/MA0842.1/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGCTAACTAT
AATTTGCTGAC---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGCTAACTAT
TTATGCAAATTA-
 A C G T A C G T A C G T A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T

MAFK/MA0496.1/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGCTAACTAT-
AAANTGCTGACTNAG
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T A C G T
C G T A C G T A C G T A G C A T C G A T A T C G G T A C A C G T A C T G C T G A A T G C G C A T G A T C C G T A C A T G

Mafb/MA0117.2/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TGCTAACTAT
AAAATGCTGACT--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T A C G T A C G T

PH0167.1_Tcf1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TGCTAACTAT---
CCTTAGTTAACTAAAAT
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G A T C G T A C G T A A T G C G A C T G T C A A C G T A C G T A C G T A C G T
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T