Information for 5-AARCTTGTTCTGWAAM (Motif 5)

C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C
Reverse Opposite:
C A T G G A C T A C G T G C T A A G T C C G T A C T A G G T C A C G T A A G T C C T G A C T G A A C T G A G C T A C G T A G C T
p-value:1e-12
log p-value:-2.964e+01
Information Content per bp:1.703
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.6 +/- 28.0bp
Average Position of motif in Background35.6 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AARCTTGTTCTGWAAM
AAGCTTG---------
 C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AARCTTGTTCTGWAAM
AAAATTGTTATGAA--
 C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A A C G T A C G T

GRHL1/MA0647.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AARCTTGTTCTGWAAM
NAAACCGGTTTT-----
 A C G T C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C
G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T A C G T A C G T A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AARCTTGTTCTGWAAM
GGAAAAATTGTTAGGAA--
 A C G T A C G T A C G T C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A A C G T A C G T

TFCP2/MA0145.3/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AARCTTGTTCTGWAAM
AAACCGGTTT------
 C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C
T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AARCTTGTTCTGWAAM-
NNCTTTGTTTTGNTNNN
 C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

SRY/MA0084.1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AARCTTGTTCTGWAAM
---ATTGTTTAN----
 C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C
A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C A C G T A C G T A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AARCTTGTTCTGWAAM
AANTTATTGTTCTNNA--
 A C G T A C G T C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AARCTTGTTCTGWAAM
---ATTGTT-------
 C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C
A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AARCTTGTTCTGWAAM
-TAATTGTTCTAAAC-
 C T G A G T C A T C G A G T A C A G C T A G C T C T A G C G A T A C G T A G T C C G A T A C T G C G A T G T C A C T G A G T A C
A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C A C G T