Information for 12-MCAAAATACATGC (Motif 13)

T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C
Reverse Opposite:
C T A G A G T C C G T A A C G T A C T G G A C T G T C A A C G T A C G T A C G T A C G T C A T G A C T G
p-value:1e-8
log p-value:-2.021e+01
Information Content per bp:1.818
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif28.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets57.3 +/- 22.2bp
Average Position of motif in Background59.3 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0082.1_Irx2/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:MCAAAATACATGC------
--TAAATACATGTAAAATT
 T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PH0087.1_Irx6/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:MCAAAATACATGC------
--AAAATACATGTAAAAAT
 T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:MCAAAATACATGC------
--AATATACATGTAAAATT
 T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--MCAAAATACATGC
GAAAAAATTGCAAGG
 A C G T A C G T T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

MEF2C/MA0497.1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----MCAAAATACATGC
ATGCTAAAAATAGAA--
 A C G T A C G T A C G T A C G T T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:MCAAAATACATGC------
--AATATACATGTAATATA
 T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

PH0085.1_Irx4/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:MCAAAATACATGC------
--AATATACATGTAAAACA
 T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PH0083.1_Irx3_1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:MCAAAATACATGC------
--AAAATACATGTAATACT
 T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:MCAAAATACATGC
-GAATATTCAT--
 T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------MCAAAATACATGC
CANAGNNCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C G T A C C G T A C G T A C G T A C G T A A C G T C G T A A G T C T G C A C G A T A C T G A G T C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T