Information for 4-GGGAAATGKAGTCTGC (Motif 6)

C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
Reverse Opposite:
A T C G T A G C C G T A T C A G C T G A T A G C G A C T T G C A T A G C G T C A G A C T A C G T C A G T A G T C A G T C G A T C
p-value:1e-12
log p-value:-2.934e+01
Information Content per bp:1.556
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.54%
Number of Background Sequences with motif502.7
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets47.2 +/- 24.9bp
Average Position of motif in Background48.8 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GGGAAATGKAGTCTGC
GGGAATTGTAGT----
 C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T A C G T A C G T A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:2
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------GGGAAATGKAGTCTGC
GCATTCTGGGAATTGTAGTT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
T C A G T A G C G T C A A G C T A C G T A G T C A G C T A C T G A C T G C T A G C G T A C T G A C G A T A G C T A C T G A C G T C T G A A C T G A C G T A G C T A C G T A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:3
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------GGGAAATGKAGTCTGC
GCMTBCTGGGAGTTGTAGTY---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GGGAAATGKAGTCTGC
------VBSYGTCTGG
 C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.54
Offset:8
Orientation:forward strand
Alignment:GGGAAATGKAGTCTGC
--------TWGTCTGV
 C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGGAAATGKAGTCTGC
AGAGGAAGTG--------
 A C G T A C G T C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GGGAAATGKAGTCTGC
--------CTGTCTGG
 C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GGGAAATGKAGTCTGC
AAAGRGGAAGTG--------
 A C G T A C G T A C G T A C G T C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
C G T A C T G A C G T A C T A G T C G A C T A G A C T G C G T A C G T A T A C G A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GGGAAATGKAGTCTGC
TGGAACAGMA------
 C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GGGAAATGKAGTCTGC
CSTGGGAAAD---------
 A C G T A C G T A C G T C T A G T A C G T C A G G T C A T G C A C T G A C A G T A T C G A C G T C T G A A T C G G A C T A G T C G C A T A T C G T A G C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T