Information for 2-CCCTGCCGTGTGGCAC (Motif 3)

G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
Reverse Opposite:
A T C G A C G T A C T G T A G C G T A C G C T A T A G C C T G A G A T C C A T G A C T G A T G C C G T A A C T G C T A G A C T G
p-value:1e-13
log p-value:-3.184e+01
Information Content per bp:1.745
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.4 +/- 26.5bp
Average Position of motif in Background37.8 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCCGTGTGGCAC
CCCCCTGCTGTG------
 A C G T A C G T G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2C/MA0524.2/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCCTGCCGTGTGGCAC
---TGCCCTNGGGCA-
 G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
A C G T A C G T A C G T G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCCTGCCGTGTGGCAC
---TGCCCTNGGGCA-
 G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
A C G T A C G T A C G T G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCCGTGTGGCAC
TNTCCTGCTGTGNNG---
 A C G T A C G T G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCCTGCCGTGTGGCAC
GGCCYCCTGCTGDGH-----
 A C G T A C G T A C G T A C G T G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCCGTGTGGCAC
TCNCCTGCTGNGNNN---
 A C G T A C G T G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCCTGCCGTGTGGCAC
---TGCCCNGGGGCA-
 G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCCTGCCGTGTGGCAC
--NTGCCCTAGGGCAA
 G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
A C G T A C G T C G T A G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A G C T A

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCCTGCCGTGTGGCAC
--NTGCCCTTGGGCGN
 G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
A C G T A C G T G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCCGTGTGGCAC
NNTCCTGCTGTGNNN---
 A C G T A C G T G T A C A G T C G T A C A C G T A T C G A G T C G T A C C T A G A G C T A T C G C A G T A C T G A C T G T A G C G T C A A T G C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T