Information for 13-SCCTCTGCTGGCT (Motif 19)

A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T
Reverse Opposite:
C G T A A C T G A G T C A G T C C G T A A C T G A G T C C G T A A C T G C G T A A C T G A C T G A T C G
p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.896
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.4 +/- 30.3bp
Average Position of motif in Background50.1 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.68
Offset:-8
Orientation:forward strand
Alignment:--------SCCTCTGCTGGCT
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----SCCTCTGCTGGCT-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------SCCTCTGCTGGCT-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:SCCTCTGCTGGCT
CCCCCTGCTGTG-
 A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.62
Offset:5
Orientation:forward strand
Alignment:SCCTCTGCTGGCT--
-----TGCTGACTCA
 A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--SCCTCTGCTGGCT
GGCCYCCTGCTGDGH
 A C G T A C G T A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:SCCTCTGCTGGCT
-NAHCAGCTGD--
 A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T
A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:SCCTCTGCTGGCT
-DCTCAGCAGG--
 A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:SCCTCTGCTGGCT
----CAGCTGNT-
 A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T
A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:SCCTCTGCTGGCT---
-AAANTGCTGACTNAG
 A T C G T A G C A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C T G A C T G T A G C A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A G C A T C G A T A T C G G T A C A C G T A C T G C T G A A T G C G C A T G A T C C G T A C A T G