Information for 11-CTCAGAATGTCAA (Motif 14)

A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A
Reverse Opposite:
A C G T A C G T A C T G C G T A A G T C C G T A A G C T A C G T A G T C A C G T A C T G G C T A A C T G
p-value:1e-9
log p-value:-2.168e+01
Information Content per bp:1.885
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.0 +/- 24.6bp
Average Position of motif in Background7.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CTCAGAATGTCAA
------NTGTCAN
 A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CTCAGAATGTCAA
----AAAAGTCAA
 A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A
A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTCAGAATGTCAA
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CTCAGAATGTCAA
-----CCTGTCAA
 A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A
A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTCAGAATGTCAA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGAATGTCAA
DCTCAGCAGG----
 A C G T A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTCAGAATGTCAA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Rarg/MA0859.1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCAGAATGTCAA
AAGGTCAAAAGGTCAA
 A C G T A C G T A C G T A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.58
Offset:7
Orientation:forward strand
Alignment:CTCAGAATGTCAA--
-------TGTCANYT
 A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

RARA/MA0729.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCAGAATGTCAA--
GAGGTCAAAAGGTCAATG
 A C G T A C G T A C G T A G T C C A G T A G T C C G T A A C T G C G T A C T G A C G A T A C T G A C G T A G T C C G T A G T C A A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G