Information for 5-CCACYAGGTGGCA (Motif 3)

A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A
Reverse Opposite:
A G C T A C T G A G T C G T A C G C T A G A T C A G T C A C G T C T A G A T C G A C G T A C T G A C T G
p-value:1e-24
log p-value:-5.570e+01
Information Content per bp:1.807
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.70%
Number of Background Sequences with motif44.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets51.0 +/- 24.9bp
Average Position of motif in Background50.8 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.90
Offset:-3
Orientation:reverse strand
Alignment:---CCACYAGGTGGCA----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---CCACYAGGTGGCA---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGGTGGCA------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCACYAGGTGGCA
--AACAGATGGC-
 A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGGTGGCA
DCHCAGCAGGRGGCC
 A C G T A C G T A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCACYAGGTGGCA
--NNCAGGTGNN-
 A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A
A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CCACYAGGTGGCA
-----AGGTGTCA
 A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCACYAGGTGGCA
-SDGCAGGTGCNS
 A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A
A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

SCRT1/MA0743.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCACYAGGTGGCA
GAGCAACAGGTGGTT
 A C G T A C G T A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

SCRT2/MA0744.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCACYAGGTGGCA
ATGCAACAGGTGG--
 A C G T A C G T A G T C A G T C G T C A A T G C G A T C C G T A A C T G C T A G C G A T A C T G A C T G G T A C T C G A
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T