Information for 6-GBGCAGAGGGGAGBCC (Motif 7)

A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G T A C G G T A C A C G T A T G C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A T G C T G C A G T A C
p-value:1e-13
log p-value:-3.148e+01
Information Content per bp:1.816
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.5 +/- 21.3bp
Average Position of motif in Background31.0 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFKB1/MA0105.4/Jaspar

Match Rank:1
Score:0.65
Offset:6
Orientation:forward strand
Alignment:GBGCAGAGGGGAGBCC---
------AGGGGAATCCCCT
 A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GBGCAGAGGGGAGBCC
TGCGCATAGGGGAGGAG
 A C G T A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GBGCAGAGGGGAGBCC
GTAGGGCAAAGGTCA----
 A C G T A C G T A C G T A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GBGCAGAGGGGAGBCC
TAGGGCAAAGGTCA----
 A C G T A C G T A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GBGCAGAGGGGAGBCC---
------AGGGGATTCCCCT
 A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:GBGCAGAGGGGAGBCC---
-------GGGGATTCCCCC
 A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GBGCAGAGGGGAGBCC
TGGGGCAAAGGTCA----
 A C G T A C G T A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:8
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GBGCAGAGGGGAGBCC
------TGGGGA----
 A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GBGCAGAGGGGAGBCC
---CAAAGGTCAG---
 A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GBGCAGAGGGGAGBCC
AGGGGTCAGAGGTCA----
 A C G T A C G T A C G T A C T G A C G T A T C G G T A C C G T A A C T G C G T A A C T G C T A G A C T G A T C G C G T A A C T G A C G T A G T C A G T C
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T