Information for 9-CACAGCTGCT (Motif 20)

A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T
Reverse Opposite:
T C G A A C T G T A G C G C T A T C A G T G A C C G A T A C T G C G A T T A C G
p-value:1e-4
log p-value:-1.078e+01
Information Content per bp:1.504
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif10.30%
Number of Background Sequences with motif3097.2
Percentage of Background Sequences with motif6.41%
Average Position of motif in Targets52.2 +/- 28.2bp
Average Position of motif in Background49.6 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CACAGCTGCT
CGCAGCTGCG
 A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CACAGCTGCT-
-NCAGCTGCTG
 A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T A C G T
A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CACAGCTGCT
--CAGCTGNT
 A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T
A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CACAGCTGCT----
CTCAGCAGCTGCTACTG
 A C G T A C G T A C G T A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CACAGCTGCT
NNACAGCTGC-
 A C G T A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CACAGCTGCT
AGCAGCTGCT
 A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T
T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CACAGCTGCT--
AGCAGCTGCTNN
 A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T A C G T A C G T
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:8
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CACAGCTGCT-
-ACAGCTGTTV
 A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T A C G T
A C G T T C G A A G T C C G T A T A C G A T G C A C G T A C T G A G C T A G C T T G C A

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CACAGCTGCT
NNVVCAGCTGBN
 A C G T A C G T A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CACAGCTGCT-
-ACAGCTGTTN
 A T G C G C T A T G A C G C T A A C T G A G T C C G A T A T C G T G A C A G C T A C G T
A C G T T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T A G T C