Information for 6-GGCCTGCGGTGAG (Motif 6)

A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G
Reverse Opposite:
A G T C A C G T A G T C C T G A A G T C A G T C A C T G A G T C G T C A A C T G A C T G G T A C A G T C
p-value:1e-10
log p-value:-2.521e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.8 +/- 17.7bp
Average Position of motif in Background76.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGCCTGCGGTGAG-
TNTCCTGCTGTGNNG
 A C G T A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGCCTGCGGTGAG-
NNTCCTGCTGTGNNN
 A C G T A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGCCTGCGGTGAG-
TCNCCTGCTGNGNNN
 A C G T A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGCCTGCGGTGAG
NTGCCCANNGGTNA-
 A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGCCTGCGGTGAG
--CCTGCTGAGH-
 A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGCCTGCGGTGAG
GGCCYCCTGCTGDGH-
 A C G T A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCCTGCGGTGAG
CCCCCTGCTGTG--
 A C G T A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCCTGCGGTGAG
NGCCTGAGGCN--
 A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGCCTGCGGTGAG
ATTGCCTGAGGCAAT
 A C G T A C G T A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGCCTGCGGTGAG
TGCCTGAGGCN--
 A C T G A C T G A G T C A G T C A C G T A C T G A G T C A C T G A C T G A G C T A C T G G T C A A C T G
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T