Information for 16-TAGCACAGTC (Motif 31)

A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A C G T A C T G C G A T A T C G A G T C A C G T G T C A
p-value:1e-5
log p-value:-1.243e+01
Information Content per bp:1.902
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif34.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets31.0 +/- 23.4bp
Average Position of motif in Background41.7 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TAGCACAGTC
TRAGGTCA---
 A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------TAGCACAGTC
TATAAGTAGGTCAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TAGCACAGTC--
----TCAGTCTT
 A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TAGCACAGTC
AAYTAGGTCA---
 A C G T A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TAGCACAGTC
---CACAGN-
 A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TAGCACAGTC
CCAGGAACAG--
 A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TAGCACAGTC
-AGGTCA---
 A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TAGCACAGTC
ATCAAGGTCA---
 A C G T A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TAGCACAGTC
CAAAGGTCAG--
 A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TAGCACAGTC
AAGGTCAC--
 A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C T G A C G T A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T