Information for 4-CACAAAKGATAAC (Motif 5)

G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G T A A G C T A T G C G T C A A C G T A C G T A C G T A C T G A C G T C A T G
p-value:1e-13
log p-value:-3.204e+01
Information Content per bp:1.837
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.3 +/- 24.5bp
Average Position of motif in Background89.8 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CACAAAKGATAAC
ATAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CACAAAKGATAAC----
--CAAACAACAACACCT
 G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CACAAAKGATAAC
AGAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

Mecom/MA0029.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CACAAAKGATAAC-
AAGATAAGATAACA
 G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CACAAAKGATAAC-----
-ANNNATGATACCCCATC
 G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G T C A T G C A C G T A G T C A C T G A G A C T C A T G C G T A A G C T G T C A A G T C A T G C A G T C A G T C G C T A C G A T G A T C

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CACAAAKGATAAC
AAAACAAAGG-----
 A C G T A C G T G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CACAAAKGATAAC
AAACAGACAAAGGAAT--
 A C G T A C G T A C G T A C G T A C G T G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CACAAAKGATAAC
AACAAAGG-----
 G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CACAAAKGATAAC
RACAAWGG-----
 G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CACAAAKGATAAC-----
---ATGTCACAACAACAC
 G A T C C G T A G T A C C G T A G T C A C G T A A C G T A T C G C T G A C G A T C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C