Information for 5-RTATGCAAAT (Motif 5)

T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T
Reverse Opposite:
C G T A A C G T A C G T C G A T T C A G G T A C T C G A C G A T C T G A A G C T
p-value:1e-22
log p-value:-5.126e+01
Information Content per bp:1.720
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif7.24%
Number of Background Sequences with motif662.5
Percentage of Background Sequences with motif1.42%
Average Position of motif in Targets47.1 +/- 24.1bp
Average Position of motif in Background50.2 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU5F1B/MA0792.1/Jaspar

Match Rank:1
Score:0.97
Offset:1
Orientation:forward strand
Alignment:RTATGCAAAT
-TATGCAAAT
 T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:RTATGCAAAT---
ATATGCAAATNNN
 T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T A C G T A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:RTATGCAAAT
TTATGCAAAT
 T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:forward strand
Alignment:RTATGCAAAT
ATATGCAAAT
 T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:5
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-RTATGCAAAT-
AATATGCAAATT
 A C G T T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.94
Offset:1
Orientation:forward strand
Alignment:RTATGCAAAT---
-TATGCWAATBAV
 T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T A C G T A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.94
Offset:1
Orientation:forward strand
Alignment:RTATGCAAAT
-TATGCAAAT
 T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--RTATGCAAAT----
TTGTATGCAAATTAGA
 A C G T A C G T T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T A C G T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--RTATGCAAAT----
TTGTATGCAAATTAGA
 A C G T A C G T T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--RTATGCAAAT----
TTGTATGCAAATTAGA
 A C G T A C G T T C G A G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A G C A T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A