Information for 11-CGCACGCGAC (Motif 20)

G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C
Reverse Opposite:
T A C G C A G T A G T C C T A G T A G C T A C G C A G T A C T G A T G C C A T G
p-value:1e-7
log p-value:-1.729e+01
Information Content per bp:1.651
Number of Target Sequences with motif80.0
Percentage of Target Sequences with motif9.00%
Number of Background Sequences with motif2128.4
Percentage of Background Sequences with motif4.67%
Average Position of motif in Targets50.3 +/- 26.3bp
Average Position of motif in Background48.9 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes1/MA1099.1/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CGCACGCGAC
GGCACGCGTC
 G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

Tcfl5/MA0632.1/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGCACGCGAC
GGCACGTGCC
 G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C
C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C

Arntl/MA0603.1/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CGCACGCGAC-
-NCACGTGACN
 G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C A C G T
A C G T C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C

PB0147.1_Max_2/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CGCACGCGAC--
GTGCCACGCGACTG
 A C G T A C G T G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CGCACGCGAC
--CACGCA--
 G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CGCACGCGAC
TBGCACGCAA-
 A C G T G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

BHLHE40/MA0464.2/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGCACGCGAC
ATCACGTGAC
 G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C
T G C A C A G T G T A C T G C A G A T C T C A G G A C T A C T G G T C A G A T C

HEY2/MA0649.1/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CGCACGCGAC
GGCACGTGNC
 G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C

TFE3/MA0831.1/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGCACGCGAC
ATCACGTGAC
 G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C
T C G A A G C T A T G C G C T A A G T C T C A G G C A T A C T G T G C A G A T C

Id2/MA0617.1/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CGCACGCGAC
-GCACGTGA-
 G T A C T A C G T G A C G T C A A T G C A T C G G A T C T C A G G T C A A T G C
A C G T T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A A C G T