Information for 6-GAAGCATGCT (Motif 10)

C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T
Reverse Opposite:
C G T A A T C G T G A C T G C A C G A T A T C G A G T C C G A T C G A T G T A C
p-value:1e-10
log p-value:-2.364e+01
Information Content per bp:1.656
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif7.87%
Number of Background Sequences with motif1506.3
Percentage of Background Sequences with motif3.31%
Average Position of motif in Targets48.3 +/- 26.9bp
Average Position of motif in Background48.8 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAAGCATGCT
NGAAGC-----
 A C G T C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GAAGCATGCT----
----CCTGCTGAGH
 C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAAGCATGCT
-AAGCTTG--
 C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T
A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAAGCATGCT------
-NNTCCTGCTGTGNNN
 C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAAGCATGCT------
-TCNCCTGCTGNGNNN
 C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GAAGCATGCT-
------NGCTN
 C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAAGCATGCT------
-TNTCCTGCTGTGNNG
 C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAAGCATGCT-
-TBGCACGCAA
 C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------GAAGCATGCT
NNNTTAGGTAGCNTNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GAAGCATGCT
----CACGCA
 C A T G G C T A G C T A T C A G T A G C G C T A A C G T A C T G T A G C G C A T
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A