Information for 1-GGTATCTAGT (Motif 5)

C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T
Reverse Opposite:
T C G A T G A C C G A T C T G A C T A G C T G A G C A T G T C A T G A C G T A C
p-value:1e-11
log p-value:-2.761e+01
Information Content per bp:1.675
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif388.7
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets49.4 +/- 22.7bp
Average Position of motif in Background49.7 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0166.1_Six6_2/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GGTATCTAGT--
AATAGGGTATCAATATT
 A C G T A C G T A C G T A C G T A C G T C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GGTATCTAGT--
AATAGGGTATCATATAT
 A C G T A C G T A C G T A C G T A C G T C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

PH0165.1_Six6_1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGTATCTAGT--
AATAGGGTATCAATTAT
 A C G T A C G T A C G T A C G T A C G T C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

PH0161.1_Six1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGTATCTAGT--
GATGGGGTATCATTTTT
 A C G T A C G T A C G T A C G T A C G T C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

PH0162.1_Six2/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GGTATCTAGT--
AATGGGGTATCACGTTT
 A C G T A C G T A C G T A C G T A C G T C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGTATCTAGT--
ACCCGTATCAAATTT
 A C G T A C G T A C G T C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T A C G T A C G T
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGTATCTAGT---
NNNGTAACTANGNNA
 A C G T A C G T C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

Six3/MA0631.1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGTATCTAGT--
GATAGGGTATCACTAAT
 A C G T A C G T A C G T A C G T A C G T C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGTATCTAGT--
GATAGGGTATCACTAAT
 A C G T A C G T A C G T A C G T A C G T C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGTATCTAGT
GTTAACTAGN
 C A T G A C T G C A G T C G T A G A C T G A T C G A C T G C T A A C T G A G C T
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T