Information for 9-CTTAAGCAGA (Motif 27)

A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G A G T C A G C T A C G T C G T A C G T A A C T G
p-value:1e-5
log p-value:-1.162e+01
Information Content per bp:1.967
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif23.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets32.0 +/- 27.0bp
Average Position of motif in Background51.6 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAGCAGA----
TNNATTATGCATANNTT
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.59
Offset:-8
Orientation:forward strand
Alignment:--------CTTAAGCAGA
CTTAACCACTTAAGGAT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTTAAGCAGA-
-TTATGCAAAT
 A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A A C G T
A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

NRL/MA0842.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTTAAGCAGA--
-GTCAGCANNTN
 A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A A C G T A C G T
A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.56
Offset:-8
Orientation:forward strand
Alignment:--------CTTAAGCAGA
CATAACCACTTAACAAC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAGCAGA----
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTTAAGCAGA
-GTAAACAG-
 A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A
A C G T C T A G C A G T G T C A C G T A C T G A A G T C C G T A T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CTTAAGCAGA-----
-----CCAGACRSVB
 A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CTTAAGCAGA
ACCACTTAA-----
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTTAAGCAGA
-TTAATTAG-
 A G T C A C G T A C G T C G T A C T G A A C T G A G T C C G T A A C T G C G T A
A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T