Information for 5-CAGCCAGCTA (Motif 19)

A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A
Reverse Opposite:
G C A T C G T A C T A G A G T C C G A T C T A G C T A G A T G C A C G T A C T G
p-value:1e-9
log p-value:-2.097e+01
Information Content per bp:1.847
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif3.20%
Number of Background Sequences with motif255.2
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets45.5 +/- 28.5bp
Average Position of motif in Background50.4 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGCTA
BCAGACWA---
 A C G T A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGCCAGCTA
CAGCC-----
 A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGCTA
CCAGACAG---
 A C G T A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAGCCAGCTA-
-TGGCAGTTGN
 A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A A C G T
A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CAGCCAGCTA---
---CCAGCTGTTN
 A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCAGCTA
CACAGN------
 A C G T A C G T A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAGCCAGCTA
-TGCCAA---
 A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGCTA----
SCAGYCADGCATGAC
 A C G T A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGCCAGCTA-
-NAHCAGCTGD
 A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A A C G T
A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T

YY1/MA0095.2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGCTA-
GCNGCCATCTTG
 A C G T A G T C C G T A A T C G A G T C A G T C C G T A A C T G G A T C C G A T C G T A A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G