Information for 5-ACAVCCATAAATC (Motif 15)

C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C G T A C G T C G T A C G A T A C T G A C T G A C T G C G A T A C T G A C G T
p-value:1e-10
log p-value:-2.346e+01
Information Content per bp:1.846
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.3 +/- 19.0bp
Average Position of motif in Background37.5 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:ACAVCCATAAATC--
--GGCCATAAATCAC
 C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.78
Offset:3
Orientation:forward strand
Alignment:ACAVCCATAAATC-
---GCCATAAATCA
 C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.77
Offset:2
Orientation:forward strand
Alignment:ACAVCCATAAATC-
--GGCCATAAATCA
 C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.76
Offset:2
Orientation:forward strand
Alignment:ACAVCCATAAATC-
--GGCCATAAATCA
 C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ACAVCCATAAATC-
--NGYCATAAAWCH
 C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:ACAVCCATAAATC-
----TCATCAATCA
 C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.64
Offset:7
Orientation:forward strand
Alignment:ACAVCCATAAATC----
-------CAAATCACTG
 C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ACAVCCATAAATC
---GCAATAAAA-
 C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C
A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACAVCCATAAATC
-AAGCCATAAAA-
 C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ACAVCCATAAATC
---CCAATAAAAC
 C G T A A G T C G C T A T G A C G T A C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A G T C
A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C