Information for 8-GCCGGCAGGCAGGRAG (Motif 9)

A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G
Reverse Opposite:
A T G C A G C T A G C T A G T C A G T C A G C T A C T G T A G C A T G C A C G T A C T G G T A C A T G C A C T G A T C G A T G C
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.737
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif32.2
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets42.8 +/- 14.4bp
Average Position of motif in Background62.7 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:1
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GCCGGCAGGCAGGRAG
-----CWGGCGGGAA-
 A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G
A C G T A C G T A C G T A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCGGCAGGCAGGRAG
SCAGYCADGCATGAC-
 A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCCGGCAGGCAGGRAG
TGCCCCCGGGCA-----
 A C G T A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T A C G T A C G T A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:4
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GCCGGCAGGCAGGRAG-
------GGGCGGGAAGG
 A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G

E2F6/MA0471.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GCCGGCAGGCAGGRAG-
------GGGCGGGAAGG
 A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

TFAP2B/MA0811.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCGGCAGGCAGGRAG
TGCCCCAGGGCA-----
 A C G T A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G
G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A A C G T A C G T A C G T A C G T A C G T

TFAP2C/MA0524.2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCGGCAGGCAGGRAG
TGCCCCAGGGCA-----
 A C G T A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G
G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A A C G T A C G T A C G T A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:7
Orientation:forward strand
Alignment:GCCGGCAGGCAGGRAG-
-------GGCGGGAARN
 A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GCCGGCAGGCAGGRAG
----BTKGGCGGGAAA
 A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G
A C G T A C G T A C G T A C G T A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GCCGGCAGGCAGGRAG--
------TGGCGGGAAAHB
 A T C G A T G C T G A C A T C G A C T G A G T C T G C A T A C G A C T G A G T C T C G A A C T G T C A G T C G A C T G A T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G